Migrate AWS S3 to Hetzner Object Storage – rclone & MinIO Client Guide

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When migrating from AWS, S3 is often the first big challenge: lots of data, lots of requests – and everything needs to be correct in the end. Hetzner Object Storage is S3-compatible (Docs), so existing S3 tools continue to work – just with Hetzner endpoints.

This guide shows a proven workflow: Initial Copy → Delta Sync → Cutover, including tool comparison (rclone vs. MinIO Client vs. AWS CLI) and verification checks.

Table of Contents

• Prerequisites and Planning
• Tool Selection: rclone vs. MinIO Client vs. AWS CLI
• Step-by-Step: Initial Sync → Delta Sync → Cutover
• Verify Data Integrity
• Common Pitfalls
• Our Approach at WZ-IT
• Related Guides

Prerequisites and Planning

Pre-Migration Checklist

Before running any commands, clarify these points – they determine tool choice and cutover strategy:

⚠️ Important: rclone, s3cmd, and aws s3 do not copy custom metadata. If you use custom metadata headers, use MinIO Client (mc) (Hetzner Docs).

Choose Target Region/Endpoint

Hetzner Object Storage offers regional endpoints in the EU:

• fsn1.your-objectstorage.com (Falkenstein)
• nbg1.your-objectstorage.com (Nuremberg)
• hel1.your-objectstorage.com (Helsinki)

Choose based on:

• Proximity to compute workloads (minimize latency)
• Proximity to users (for public assets)
• Compliance requirements (data location)

Create S3 Credentials

At Hetzner, you create S3 credentials in the Console. The secret key is only visible once – store it directly in your secret manager (1Password, Vault, KMS), not in plaintext repos (Hetzner Docs).

Tool Selection: rclone vs. MinIO Client vs. AWS CLI

rclone (recommended without custom metadata)

Strengths:

• Excellent for sync, delta sync, listings, and checks
• Can compare source/destination without modifying data
• Ideal for "Initial Copy → Delta → Cutover"

Weakness:

• Does not copy custom metadata

MinIO Client mc (recommended with custom metadata)

Strengths:

• Preserves custom metadata during migration
• mc mirror is very migration-friendly (can be used incrementally)

Weaknesses:

• For very large data volumes, fine-tuning may be needed (retries, parallelism)

AWS CLI (aws s3 sync)

Limitations:

• Cannot use two profiles simultaneously – requires local staging (download from source, upload to target)
• Does not copy custom metadata

Rule of thumb:

• Metadata doesn't matter? → rclone
• Metadata important? → MinIO mc
• Quick & simple, no metadata? → AWS CLI (but often cumbersome)

Step-by-Step: Initial Sync → Delta Sync → Cutover

Step 1: Create Target Bucket in Hetzner

Create a bucket in the Hetzner Console (choose name and location).

Public URL format at Hetzner:

https://<bucket-name>.<location>.your-objectstorage.com/<file-name>

Step 2: Dry Run with Subset

Before migrating 5–50 TB: Test with a prefix like test/ or assets/2025-….

Option A: rclone

# Configure remotes first (aws + hetzner)
rclone sync aws:my-bucket/assets/ hetzner:my-bucket/assets/ \
  --progress --transfers 32 --checkers 32

Option B: MinIO Client

mc mirror --overwrite --remove aws/my-bucket/assets/ hetzner/my-bucket/assets/

Step 3: Initial Copy (Bulk Sync)

Now migrate everything (or the large prefixes first).

rclone Bulk Copy:

rclone sync aws:my-bucket hetzner:my-bucket \
  --progress --transfers 64 --checkers 64 \
  --fast-list --retries 10 --low-level-retries 20

MinIO Client Bulk Copy:

mc mirror --overwrite aws/my-bucket hetzner/my-bucket

Tip: For very many objects, --fast-list (rclone) helps reduce API calls – but test beforehand (memory/listing behavior).

Step 4: Delta Sync (Before Cutover)

If your S3 bucket continues to change, run multiple delta syncs before cutover:

• T-24h: Delta Sync
• T-1h: Delta Sync
• T-5min: Final Delta Sync after "freeze" (if possible)

rclone sync aws:my-bucket hetzner:my-bucket \
  --progress --transfers 64 --checkers 64

Step 5: Cutover (Switch Application)

What "cutover" means depends on the use case:

Note: The public URL contains the location in the hostname (.<location>.).

Verify Data Integrity

1. Compare Listings

Compare per prefix: object count, total size.

rclone size aws:my-bucket
rclone size hetzner:my-bucket

2. rclone check: Compare Sizes + Hashes

rclone check compares size and hashes (e.g., MD5/SHA1) and writes reports without modifying data (rclone Docs).

rclone check aws:my-bucket hetzner:my-bucket --one-way --progress

⚠️ ETag ≠ MD5 for Multipart Uploads: For objects uploaded via multipart upload, the ETag is not the MD5 digest (AWS Docs). Don't rely blindly on ETag-MD5 comparisons.

3. Spot Checks for Critical Data

For "must be 100% correct" data (DB dumps, releases, invoices):

• Randomly select 100–1,000 objects (various size classes)
• Download from both buckets and hash locally (SHA-256), compare

Common Pitfalls

Pitfall 1: Custom Metadata Lost

rclone, aws s3, and s3cmd do not copy custom metadata. If you use any → use MinIO Client.

Pitfall 2: Wrong Endpoint

Hetzner endpoints are location-specific (fsn1/nbg1/hel1). If you use fsn1 but the bucket is in nbg1, you'll see strange errors or empty listings.

Pitfall 3: Public URL Doesn't Work

Common errors with public buckets:

• Location missing (.<location>.)
• Object key incorrectly encoded (spaces/UTF-8)

Pitfall 4: Costs/Requests Miscalculated

At Hetzner Object Storage:

• Ingress is free
• S3 operations (PUT/GET/DELETE) free
• Billing via base price + included quota + pay-as-you-go

With extremely many objects, migration speed may be limited by API/parallelism, not costs.

Our Approach at WZ-IT

Our standard flow for AWS S3 → Hetzner Object Storage:

1. Assessment: Bucket features (versioning/object lock/metadata), sizes, change rate
2. Pilot: Migrate test prefix + validation checks
3. Bulk + Delta: Initial sync + multiple delta runs
4. Cutover Plan: Freeze window, endpoint switch, rollback plan
5. Monitoring: Error rates, 404s, latencies, app logs

👉 We create a concrete cutover runbook for you (including commands, parallelism tuning, verification plan).

Related Guides

You might also be interested in these guides:

• Migrate AWS RDS/Aurora PostgreSQL to Hetzner – pg_dump/restore Guide
• AWS to Hetzner Migration – Complete Overview – All AWS services at a glance
• Cloud Migration Hub – All provider migrations at a glance
• Save Cloud Costs: AWS EC2 & RDS – Up to 90% savings
• Set Up Hetzner Cloud Volumes – Block storage for your workloads
• Hetzner Expertise – Our Hetzner services overview

Ready for migration? At WZ-IT, we handle analysis, migration, and operation of your infrastructure – from AWS to cost-effective European alternatives.

👉 Request Free Cost Analysis